The mctdhtools project aims to provide a set of routines for easily reading and manipulating the output of the Heidelberg MCTDH code. Its goal is to allow a new user to quickly get started with writing custom analysis programs, and to allow more experienced users to write small, clean, and testable analysis programs, something that seems incompatible with the Fortran-77 code of the Heidelberg MCTDH package.

SCaVis is an environment for scientific computation, data analysis, and data visualization designed for scientists, engineers, and students. The program can be used for function and data plotting in 2D and 3D, histograms, statistical analysis, and symbolic calculations using the Matlab/Octave high-level interpreted language.

Gravity animates HTML page elements using the laws of physics. It uses the Box2DWeb library to animate given page elements so they move, rotate, and collide. The gravity acceleration and direction are configurable. Given callback functions may be invoked when objects collide. Objects' speed and rotation may be affected when the user drags them using the mouse pointer. Each page element can be made static or animated. Animated page elements may include the respective children elements. The elements' friction and density properties can also be configured.

iNA is a computational tool for quantitative analysis of fluctuations in biochemical reaction networks. Such fluctuations, also known as intrinsic noise, arise due to the stochastic nature of chemical reactions and cannot be ignored for when some molecules are present only in very low copy numbers as is the case in living cells. The SBML-based software computes statistical measures such as means and standard deviations of concentrations within a given accuracy using the analytical system size expansion. The result of iNA’s analysis can be tested against the computationally much more expensive stochastic simulation algorithm.

Finesse is a numeric simulation for laser interferometers using the frequency domain and Hermite-Gauss modes. It is easy to use for students. For basic use, including graphical output, no commercial software is required. The implemented physics are well documented in a 180-page manual. Simple examples are provided. Finesse can be used to compute a great variety of interferometer signals for control systems, including longitudinal control, alignment control, and thermal compensation.

ePeriodique is a graphical application which displays the periodic table of the elements. It shows basic data for each element, pictures, Bohr models, and lattice structures. It tries to use the EFL way and provide two themes, one for the desktop (default) and one for small displays (small).

openEMS is an electromagnetic field solver using the FDTD method. It employs a fully 3D Cartesian and cylindrical coordinate graded mesh. Matlab (or Octave) is used as an easy and flexible scripting interface. Advanced Features include: multi-threading, SIMD (SSE), and MPI support for high speed FDTD.