228 projects tagged "Bioinformatics"

Download Website Updated 25 Apr 2007 Engauge Digitizer

Pop 208.31
Vit 4.36

Engauge Digitizer is digitizing software that converts an image showing a graph or map into numbers. The image file can come from a scanner, digital camera, or screenshot. The numbers can be read on the screen, and written or copied to a spreadsheet. Highlights for beginners include an intuitive interface and extensive context-sensitive documentation. Highlights for experts include compensation for image distortion, cartesian and polar coordinates, linear and logarithmic coordinates, automatic scanning, graphical previews, and browser help.

No download Website Updated 24 Aug 2005 Enki

Pop 43.27
Vit 1.00

Enki is a fast 2D physics-based robot simulator. It is able to simulate cinematics, collisions, sensors, and cameras of robots on a flat surface. It also provides limited support for friction. It is able to simulate groups of robots hundreds of times faster than real-time on a modern desktop computer.

No download Website Updated 15 Aug 2001 Ensembl

Pop 18.84
Vit 1.83

Ensembl is an open source project to create and automatically maintain annotations on DNA sequence.

No download Website Updated 06 Feb 2009 Evolving Games for Unnatural Intelligence

Pop 12.00
Vit 44.01

Evolving Games for Unnatural Intelligence is a Java package for unsupervised machine learning based on Evolutionary Game Theory on directed graphs. It is able to segment data without any previuos information on the number of segments. It has no GUI, but implements generalizations of the original method proposed by Li, Chen, He and Jiang in the arxiv paper "A Novel Clustering Algorithm Based Upon Games on Evolving Network", published on 30 Dec 2008.

Download Website Updated 27 Sep 2007 Fast Genetic Algorithm

Pop 118.64
Vit 4.55

FGA (Fast Genetic Algorithm) is a simple yet powerful implementation of genetic algorithms. The library provides many variants of crossover and selection procedures, and a parallel version of the algorithm is included.

Download Website Updated 09 Jul 2005 Fasta2SVG

Pop 9.06
Vit 1.00

Fasta2SVG is a script that converts a fasta file containing a genomic DNA or protein sequence into an SVG vector graphic. It offers different modes for formatting alignments or simple sequences and various parameters such as color and size, which can be set on the command line.

No download Website Updated 28 Oct 2012 Fetal Growth

Pop 28.57
Vit 6.54

Fetal Growth is a tool for professionals involved in pregnancy assessment for monitoring obstetric measurements over time.

Download Website Updated 14 Apr 2005 FinchTV

Pop 32.54
Vit 2.35

FinchTV is a way to easily view and edit your DNA sequencer chromatogram data. It can display an entire trace in a scalable multi-pane view, and will also display quality values (when available). You can edit your base calls and save your data to a new chromatogram file for later use, select and copy sequence for use in other applications, and print your trace out to paper or a file. You also have the ability to search your sequence data using regular expressions or simple base queries, to view raw data from .ab1 files, and to reverse complement your sequence and traces.

Download Website Updated 03 Aug 2004 Fingerprint-POC

Pop 23.45
Vit 59.87

Fingerprint-POC is a fingerprint matching application using the Phase-Only Corelation method.

Download Website Updated 02 Mar 2001 FlipDCD

Pop 16.12
Vit 1.00

FlipDCD is a small utility for reversing the endianism of binary DCD trajectory files from Charmm and NAMD. This can be useful when running simulations on one architecture and visualizing or analyzing the results on another. FixDCD is a tiny utility to modify the header of an X-PLOR DCD file to make it readable by programs expecting Charmm DCD files, at the expense of a Timestep size value in the header.


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Open Camera

A camera app for Android.


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A command-line network analysis workbench.