228 projects tagged "Bioinformatics"

Download Website Updated 15 Mar 2002 BioJava

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Pop 151.10
Vit 2.38

BioJava aims to provide a comprehensive set of Java components for the rapid development of applications in Bioinformatics. It contains interfaces for representing Sequences, Features, and other important bioinformatics concepts. It can also read and write sequence data in a variety of common formats and communicate with Ensembl databases and with DAS and BioCorba servers.

No download Website Updated 21 Nov 2007 BioMAJ

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Pop 22.18
Vit 1.00

BioMAJ (BIOlogie Mises A Jour) is a workflow engine dedicated to data synchronization and processing. It automates the update cycle and the supervision of the locally mirrored data repository. The application is generalist, but was applied in the bioinformatics field for biological data bank management. The packaging includes workflow and indexing post-processing scripts for most used biological data banks. Developed in Java and Ant, the application is compatible with various Unix-based systems.

No download Website Updated 10 May 2003 BioPHP

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Pop 26.15
Vit 1.00

The BioPHP Project (formerly called GenePHP) is a non-profit, open source software project that aims to extend the PHP scripting language so that it can be used to develop bioinformatics applications. BioPHP itself is not a bioinformatics application. Rather, it is a collection of tools to help PHP developers write bioinformatics applications more rapidly than if they had to start from scratch using "vanilla" PHP.

Download Website Updated 03 Feb 2007 Bioclipse

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Pop 44.99
Vit 2.77

Bioclipse is a rich-client platform chemistry and biology workbench. It provides access to many open source bioinformatics and chemoinformatics toolkits and has plugins for the Chemistry Development Kit, JChemPaint, Jmol, and BioJava.

Download Website Updated 21 Dec 2010 Biogenesis

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Pop 37.71
Vit 3.38

Biogenesis simulates in a visual fashion the processes involved in the evolution of unicellular organisms in nature. It tries to be a didactic approximation to the ideas of mutation or evolution, and can be enjoyed also as an entertainment. It's intended to serve as a support to show students some basic biological facts. The idea of Biogenesis is taken from Primordial Life, but it's an independent project.

Download No website Updated 24 Feb 2011 Bioinformatics Benchmark System

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Pop 27.29
Vit 1.00

The Bioinformatics Benchmark System is an attempt to build a reasonable testing framework, tests, and data, to enable end users and vendors to probe the performance of their systems. It is not trying to be the last word in informatics benchmarking, as there are simply too many codes, tests, data sets, and databases. The goal is to create a core of tests that all may download and use to probe specific elements of system performance. The end goal is to enable a pluggable set of tests, including the core tests, so that performance data may be gathered.

Download Website Updated 16 Jul 2007 Biomolecule Toolkit

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Pop 31.64
Vit 3.23

The Biomolecule Toolkit is an Open Source library for the structural modeling of biological macromolecules. The toolkit provides a C++ interface for common tasks in computational structural biology, to facilitate the development of molecular modeling, design, and analysis tools.

Download Website Updated 27 Sep 2009 Bioperl

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Pop 101.02
Vit 7.98

Bioperl is set of Perl Modules for bioinformatics. It contains objects for Sequences, features on Sequences, and other important bioinformatics attributes.

No download Website Updated 21 Dec 2006 Bird Weights

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Pop 9.59
Vit 1.00

birdweights is a package of scripts to analyze data from an automated system for the measurement of mass and identification of birds at perches.

Download Website Updated 09 Apr 2010 Blossoc

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Pop 20.20
Vit 5.94

Blossoc is a linkage disequilibrium association mapping tool that attempts to build (perfect) genealogies for each site in the input, score these according to non-random clustering of affected individuals, and judge high-scoring areas as likely candidates for containing disease affecting variation. Building the local genealogy trees is based on a number of heuristics that are not guaranteed to build true trees, but have the advantage over more sophisticated methods of being extremely fast. Blossoc can therefore handle much larger data sets than more sophisticated tools, but at the cost of sacrificing some accuracy.

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Open Camera

A camera app for Android.

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mcl-edge

A command-line network analysis workbench.