Projects / SIBsim4 / Releases

All releases of SIBsim4

  •  19 Apr 2010 22:18
Avatar

    Release Notes: This release introduces a new command line switch, -S, which allows one to better fine tune how insertions/deletions are evaluated around potential splice junctions. A few problems, where spurious very small exons or large gaps in exons were incorrectly reported, have been fixed. The code was cleaned up to silence new warnings from the current GCC releases.

    •  08 May 2008 08:00
    Avatar

      Release Notes: This release introduces a chimera detection feature.

      •  01 Dec 2007 00:12
      Avatar

        Release Notes: This release fixes excessive run-time in some cases of partially repeated sequences. All users are encouraged to update.

        •  24 Apr 2007 18:00
        Avatar

          Release Notes: This release adds a -s option to better control how potential duplicated genes are detected, instead of abusing the -f option.

          •  13 Nov 2006 15:45
          Avatar

            Release Notes: This version introduces two new options, -c and -f, which provide full control over how results are filtered. This allows better detection of duplicated genes, where duplicates are incomplete or not well preserved.

            •  26 Jun 2006 14:18
            Avatar

              Release Notes: This update fixes some failures in detecting duplicated genes. Another change is to obey the default value of the K and C parameters instead of trying to compute them on the fly. This last change avoids dependancy on the math library.

              •  12 Jun 2006 09:07
              Avatar

                Release Notes: In some cases, SIBsim4 would erroneously detect polyA tails in the middle of transcripts. This led to truncated matches or even completely missing matches in cases of repeated genes. This version fixes those problems.

                •  14 Mar 2006 19:06
                Avatar

                  Release Notes: Several bugs affecting the output results and linked with the new -o switch have been fixed.

                  •  17 Jan 2006 18:36
                  Avatar

                    Release Notes: A new -o switch has been added to allow the specification of the base coordinate of the DNA sequence on the chromosome. Code has been added to avoid the creation of artefactual, very small exons. Some bugs have been fixed, and some compiler warnings have been addressed.

                    •  27 Aug 2004 15:03
                    Avatar

                      Release Notes: This release improves splicing code and error messages and adds some code cleanups and bugfixes.

                      Screenshot

                      Project Spotlight

                      episoder

                      A tool to tell you about new episodes of your favourite TV shows.

                      Screenshot

                      Project Spotlight

                      BalanceNG

                      A modern software IP load balancer.